rs228137259 SNP Detail

Summary

• ID
  rs228137259
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:16619592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTCTAA AAAGAAAAGA
  GAAACATATA AGTGGATACA TACATACATA TATACACATG TACAAAATAA ATATATATTA
  TATATTTCTA ATATAAACAC ATTAATATAT TACTATATTA ATTATATTAA CATTTAATAT
  AACAATGTTA TATATAACAT GTTTATATTA ATAATTATAG ATCTAATATA TTATATTAGT
  A
  TATAATATAA GATATATATT TATATTCTTA CATATTGGAA CTTGTGCCAT GAAAGAGAAG
  GTAAAACACA AATATGTATA AAATATAACT TCAAGCTTTT TATTTTTAAG TTTATCTACT
  TTAATTTATG TGTATGTGCA CCACATGTAT GCAGTGAGTA CCCACAGAAG CCAGAAGAGG
  GCGATATATC CCGTGAAACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss403144445	MGP_WTSI_X_16330479	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs228137259					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403144445	MGP_WTSI_X_16330479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:16619592 () rs orientation: forward

Symbol	Name	Function Class
Maob	monoamine oxidase B	within coordinates
Rr690306	regulatory region 690306	167 bp proximal