rs228139473 SNP Detail

Summary

• ID
  rs228139473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACGTAGG GACAGTGGAT
  GAGGACGACG GTGATTGAAA ATTGGGCACC GGGGAGTTGG GGGATTTTTG GTTGTTACAG
  CCTGTGTAGT TTATAGTTTT GGGGTCTGGG AGTTCAGGCA GGATCCATAA CCCAAACTAG
  CCTTGCTCTC AGGATTCTCA TGTCTCAACC CTTCCACTAT CGGGCTTACA AGCCTGCATC
  M
  CCCACCCACC CCCCCCACCC CCGCGCGCCT TATCCATGGC TGTGGTTGCT TATTAGTGGG
  AATATTTCAA AGTAAATTGT ACTCTGTGAA ACCATGTATT TTATGGAGTT GATACCAGAG
  AGAGGGGGAG ACCCAAGGTT CCCATTTTAG CAGGCTTTTG TGAGACCTTG ATAAAAACTG
  AGCCTCAGCC ACTCATTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J
ss350468184	MGP_WTSI_1_92951088	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J
rs228139473					SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468184	MGP_WTSI_1_92951088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	783 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1449 bp downstream
Tssr8032	transcription start site region 8032	1319 bp downstream
Tssr8033	transcription start site region 8033	991 bp downstream
Tssr8034	transcription start site region 8034	979 bp downstream
Tssr8035	transcription start site region 8035	961 bp downstream
Tssr8036	transcription start site region 8036	949 bp downstream
Tssr8037	transcription start site region 8037	519 bp downstream
Tssr12924	transcription start site region 12924	1683 bp upstream
Tssr12925	transcription start site region 12925	1665 bp upstream
Tssr12926	transcription start site region 12926	1639 bp upstream
Tssr12927	transcription start site region 12927	1613 bp upstream
Tssr12928	transcription start site region 12928	1463 bp upstream
Tssr12929	transcription start site region 12929	661 bp upstream
Tssr12930	transcription start site region 12930	1981 bp downstream