rs228142699 SNP Detail

Summary

• ID
  rs228142699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACC AGGAGGGTGG GAATATTCCA
  R
  CCCCTGCGAC AATTCATCTG CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss921005723	MGP_WTSI_11_88999176	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs228142699					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921005723	MGP_WTSI_11_88999176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	875 bp downstream
Rr402858	regulatory region 402858	89 bp upstream
Rr454274	regulatory region 454274	1674 bp distal
Rr454275	regulatory region 454275	within coordinates
Rr454276	regulatory region 454276	136 bp proximal
Rr454277	regulatory region 454277	732 bp proximal
Trim25	tripartite motif-containing 25	200 bp upstream
Tssr104062	transcription start site region 104062	209 bp upstream
Tssr104063	transcription start site region 104063	266 bp upstream