rs228145441 SNP Detail

Summary

• ID
  rs228145441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84106176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTAGGCC AGTGTGAGCC
  GAGAGGATTC AAACCAAAAC AAAAAGATTA AAGGAGCAGC GGCTGCAGCG GCCGCGGGGC
  CGGGCAGGGA TCCTGGGGTG GCGCGCCCGG GTTCCGCGGG GGCTGCGGCG CGCGGAGGGG
  CCGGAGGGCG GGGGCGGGAG CCAGGCGGCG AGGGGAGGGC GGGAGCCTAG GGGAGGGCGC
  K
  GGCCGGAGGA GGGGCGGGCC CGCCCGCGCG GAGCCGAGCG GAGCCAAGCG GCGGGGACTG
  GGCGCGACCC GGCCCAGCGT AGGCGCAGGA GCGGGCGGAG CTGATCGTGG GCAATGCTGA
  GGCTGGCGGC CGCCGGGGCC CGAGCCATCG TGGACATGTC GTACGCCCGT CACTTCCTGG
  ACTTCCAGGG CTCCGCCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475727	MGP_WTSI_18_84257443	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228145441					SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475727	MGP_WTSI_18_84257443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84106176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	1653 bp distal
Cpgi10337	CpG island 10337	within coordinates
Gm56504	predicted gene, 56504	1319 bp upstream
Gm58899	predicted gene, 58899	156 bp downstream
Ptgr3	prostaglandin reductase 3	74 bp upstream
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	728 bp upstream
Tshz1	teashirt zinc finger family member 1	345 bp upstream
Tssr152202	transcription start site region 152202	364 bp downstream
Tssr152203	transcription start site region 152203	26 bp upstream
Tssr152204	transcription start site region 152204	135 bp upstream
Tssr152205	transcription start site region 152205	167 bp upstream
Tssr152206	transcription start site region 152206	629 bp upstream
Tssr154121	transcription start site region 154121	1782 bp upstream
Tssr154122	transcription start site region 154122	1648 bp upstream
Tssr154123	transcription start site region 154123	1611 bp upstream
Tssr154124	transcription start site region 154124	1560 bp upstream
Tssr154125	transcription start site region 154125	1293 bp upstream
Tssr154126	transcription start site region 154126	335 bp upstream