rs228145890 SNP Detail

Summary

• ID
  rs228145890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGGCAG TTGGAAGAGA
  AGGGGAGAAT GTGAGGTGAT GGGGCTCCTG GTGGGGTTCC CTAGGTCGAC GGATCTGGGG
  CGAGGGAAGC AGAGTATCCC GCTGGGGTTC AGGCCTAGCC ACTGTTAGCT TCCCCACCCC
  CAGAAAATTT TGGAAGCTGA TTGAGGGTGG GGAGGATGCT TTTTTTTTTT TTTTTTTTTT
  W
  AATGTGCTTA GAAAAAAATG ATTCGATTGA AGGGTTTCCC CGGTTTCTGT GTAGAGGAAT
  GAAGCGTGTC TGGGATTGAA TCTGGAGCCT GGAAAAGATG CGATGCCTCT AGCTCTCCTA
  AAGCTAGGGA AGAAGAGGGA ATTCAAAAGC TAGGAAGGAA AGGGGTGAAG AACAATCTAT
  GATCCCTCTC TCCCCAGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384367050	MGP_WTSI_11_96213735	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228145890					SNP	A	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367050	MGP_WTSI_11_96213735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	245 bp distal
Cpgi3657	CpG island 3657	247 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1973 bp distal
Rr386516	regulatory region 386516	1981 bp upstream
Rr455384	regulatory region 455384	1953 bp distal
Rr455385	regulatory region 455385	780 bp distal
Tssr104519	transcription start site region 104519	786 bp downstream
Tssr104520	transcription start site region 104520	547 bp downstream
Tssr104521	transcription start site region 104521	513 bp downstream
Tssr104522	transcription start site region 104522	453 bp downstream
Tssr104523	transcription start site region 104523	403 bp downstream
Tssr104524	transcription start site region 104524	351 bp downstream
Tssr104525	transcription start site region 104525	283 bp downstream
Tssr104526	transcription start site region 104526	443 bp upstream
Tssr104527	transcription start site region 104527	465 bp upstream
Tssr104528	transcription start site region 104528	654 bp upstream
Tssr104529	transcription start site region 104529	706 bp upstream
Tssr104530	transcription start site region 104530	734 bp upstream
Tssr104531	transcription start site region 104531	903 bp upstream