rs228150147 SNP Detail

Summary

• ID
  rs228150147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGGATGT TACAGATTTC
  TGACTGTGCC TCTAATTCAG CTGAATAAAA CTGAAGTGGG ACCCCACGTG CTTGCATTTC
  CTGGCTGAGA GGAGGTAAGA CAACTGTAGG TGCCCAGATT CAGCCCGAAC ATTAGGCAAA
  CTGCATTCAC TTAGCTCAGA CCTGGAGGCT CACGGTCTCA GAGATGCAAC TGCAGGGACC
  R
  CTGGCCAAAA GAGCAGTGGG AACTGTGGCC ATGGGGCTGT CATTGACTGC TTTTTCTTTT
  TGTTTGTCTT GAGACCTTGT TTCCGGTAGT CCAGACTTGC TTCAAATCTA AAAATGTAGC
  CAAGAATGAA CTTGAACTTT GGTATTCCCG TCTTATTCCC TAAGAGCTGG GATCACAGGT
  GTGCCCACCA TACCCAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108997	CHEV_9_96339395	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228150147					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321029 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	1750 bp distal
Cpgi22164	CpG island 22164	757 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	135 bp downstream
Rr368835	regulatory region 368835	653 bp downstream
Rr684963	regulatory region 684963	1286 bp distal
Rr684964	regulatory region 684964	within coordinates
Rr684965	regulatory region 684965	1138 bp distal
Tssr90963	transcription start site region 90963	750 bp upstream