rs228152023 SNP Detail

Summary

• ID
  rs228152023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73056562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGCTAT GCGCTCGGGA
  ACGGCGGGAG GAGCGCTGCG GGAGGACGGA GACCCGTTGC AGGCCGAGCC TGGGCCCCCG
  CACACGTCCC GGTGGCGCTG CTCGGGTGCA CTGGGCCTCC CGGCCCCGAG GCCCTGCCCG
  GCCGCCCCGA GGCTACGCCG CGGCCCCACA GGCCCCGCCG CCCTCGCCTG CCCCGCCCGC
  Y
  AACCGCCAAC CGCCGCGGCA CGAGTGCCGG GCGCCGCGCG GACTCACCGG GGCCGGCTCC
  CGAGTACATG GTGGCGTTGC CGAGGGCCGC GGCCGAGGGC CGGCCGCGCG CTCCACGGGC
  CCCGACGCCG CGAGCCGCGA GGAGCCGCCG GCCGCTCGAT CCGCCCCGGC GCGGCCGCCT
  CGCAGAACAG GTTTACCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss394546500	MGP_WTSI_15_73015143	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs228152023					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546500	MGP_WTSI_15_73015143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73056562 () rs orientation: forward

Symbol	Name	Function Class
Ago2	argonaute RISC catalytic subunit 2	within coordinates
Cpgi7161	CpG island 7161	within coordinates
Rr404436	regulatory region 404436	257 bp upstream
Rr504021	regulatory region 504021	212 bp proximal
Rr504022	regulatory region 504022	524 bp proximal
Rr504023	regulatory region 504023	738 bp proximal
Rr504024	regulatory region 504024	1713 bp proximal
Tssr134684	transcription start site region 134684	150 bp downstream
Tssr134685	transcription start site region 134685	532 bp downstream
Tssr134686	transcription start site region 134686	557 bp downstream
Tssr134687	transcription start site region 134687	589 bp downstream
Tssr134688	transcription start site region 134688	608 bp downstream