rs228157526 SNP Detail

Summary

• ID
  rs228157526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGGAAA TAAATCAGAA
  AACAAAACTA GCCTCAGCAT TTGGAAAGGA GGATCAGGAA CTCATGGTTA CCTTGACTAT
  CCAAGGAGTC CAAGGTCAGC CCAAGCTATG CAAGACTGCC TCAAAAACCA AATAAAACAT
  CTCCCCCACC CCCACAACCA GCGCTCTTAA GACTAAGCCG AGAGGTGTGA ACAGCGTTCT
  R
  TCATGACTCA ACTCATGGAT TTAACACCGT GCTCTCCTGA AGGACACTCA CCTACTCAGA
  AGCAGAAGTG AGGAAGGTGA AGATGGGGGA GTGGGGAGTA GAGACACTGT AAGTAATTCA
  TGTTAAGAGG AAAACTGCCA CTGAGAATCC CCTGAATAAG ATAAAGAGAC ACAGTAATGG
  CCAAGGCTGG CTAGAGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399219	MGP_WTSI_1_90161303	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs228157526					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399219	MGP_WTSI_1_90161303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192450 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1751 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	90 bp downstream