rs228159244 SNP Detail

Summary

• ID
  rs228159244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:109737920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTACAAAG CAGATGTAAT TAATTTCCAC
  AGAGAACCAT TTACATTGAG AGTAATTTGG TCAGGAAATA CCCTCAAAGC TGAAGTCTTT
  TATAGAGACG GTATCTTTAT GGCGACTTTT TTTTCACAAC AGCTGTAGAT CATGGCATTT
  Y
  GATAGCATTT TAATTTTTTT TTGATGTTGT GTTTCTTTGG AGTGCTCTTG TTTTAAGCAA
  GCTAATTAAT CACTCTTGAA GAATAAATCC CTCTTATTAC ATTGGATTTC AGGTTTCTGA
  CATTAATTAA AGCAAGTCAG CAGGTTGAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458382	CHEV_10_109339115	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228159244					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109737920 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	Intron
Rr438756	regulatory region 438756	1797 bp proximal
Tssr99236	transcription start site region 99236	1755 bp downstream
Tssr99237	transcription start site region 99237	1771 bp downstream
Tssr99238	transcription start site region 99238	1793 bp downstream
Tssr99239	transcription start site region 99239	1816 bp downstream
Tssr99240	transcription start site region 99240	1852 bp downstream
Tssr99241	transcription start site region 99241	1893 bp downstream
Tssr99242	transcription start site region 99242	1953 bp downstream