rs228159304 SNP Detail

Summary

• ID
  rs228159304
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23719500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGAAAC ATAAATTTAA
  GAAAGCTCGG GTGTGCCAGA CTAAAACATG AGTGTAGCAG TCTGTACTAG CAGGAGACTG
  TGTGCAGGAG TTAACCAATC GGGTGTGCAG GAGTTAACCA ATCACCACTT GAATTCCTCA
  GCCAATAGTA CTACTGCGCG GGACACTTGA AAAGCAGACA CGCCTATCAG GATGCTTCTC
  K
  GTGGGAAGGA GGGGTACGAG CGCGGGTACG TGTGTTGCGC GTGTGCGAAC GCAAGCGTAC
  TTAAAGGCCA AAGTGCGCTA CTTAGGTATC TCACTTTTCC CTACGGTTAC TTGCCATGGC
  TCGTACTAAG CAGACCGCTC GCAAGTCTAC CGGCGGCAAG GCCCCGCGCA AGCAGCTGGC
  CACCAAGGCC GCCCGCAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289727	CHEV_13_23627199	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228159304					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23719500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	within coordinates
Gm55640	predicted gene, 55640	1076 bp upstream
Gm60769	predicted gene, 60769	1627 bp upstream
H2ac10	H2A clustered histone 10	1026 bp downstream
H3c8	H3 clustered histone 8	88 bp upstream
Rr403647	regulatory region 403647	1388 bp downstream
Rr403648	regulatory region 403648	within coordinates
Tssr4007	transcription start site region 4007	1625 bp upstream
Tssr118828	transcription start site region 118828	1448 bp downstream
Tssr118829	transcription start site region 118829	81 bp upstream
Tssr121712	transcription start site region 121712	1669 bp upstream
Tssr121713	transcription start site region 121713	111 bp upstream