rs228160154 SNP Detail

Summary

• ID
  rs228160154
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80358754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCATTCCTT TAAACCCACT Actgagttga
  gtcctgcctg gttcacagag cgatttccag gacagccaag gatacacaga gaaatcctgt
  cttgaaaaac taaTAGAAGG GAAAAAATAG CACTCCCTca aaacaaaaca aaacaaaaca
  W
  aacaaaacaa aacaaaacca aaaataaacc aacaacaaCA GAAAAACCCC AAAACAAACA
  AGGCATTTTG TTTTCTTTGC CTGCAGAGTC ATATTGTACT ATCCTCACAA AGCTCTTAGG
  AACTACCTGT GTAATTCAGC AGTTTTCATT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323762091	CHEV_11_80281430	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228160154					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80358754 () rs orientation: forward

Symbol	Name	Function Class
D230035N22Rik	RIKEN cDNA D230035N22 gene	22 bp downstream
Psmd11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	within coordinates
Tssr103536	transcription start site region 103536	38 bp downstream