rs228163384 SNP Detail

Summary

• ID
  rs228163384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98813371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAAGAACA TTTAAGGGGC CAAGAGACAA
  AAATTTAAGT TGCAGATAAG ATGGGAAATT TTGCCAGTTG TCCAGTTTTT CCTGAGTTGG
  TTCCCAGAAA TGGTTTCCCT GCAGTGTACA GTGAACTGGG GTGAAATGTT TAGGGGTAGA
  R
  TTTGAATCAA TTTGTGTGTA CCTCAACTAC TTACTACTTG GGTACCTATA TTTGAAACTC
  GTTCATATTT TTGGAATATT GGAATAGAAG GATTATCTTT CTTCTAGATG TTCCAAATAA
  AAAATAAATT TCTATAAAGT ATCACAGGTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321222363	CHEV_4_98591825	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228163384					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98813371 () rs orientation: forward

Symbol	Name	Function Class
Rr398351	regulatory region 398351	1622 bp downstream
Rr595806	regulatory region 595806	1245 bp distal
Rr595807	regulatory region 595807	1503 bp distal
Rr595808	regulatory region 595808	9 bp distal
Rr595809	regulatory region 595809	196 bp proximal
Tssr37902	transcription start site region 37902	1458 bp downstream
Tssr37903	transcription start site region 37903	1391 bp downstream
Tssr37904	transcription start site region 37904	1357 bp downstream
Tssr37905	transcription start site region 37905	1292 bp downstream
Tssr37906	transcription start site region 37906	1241 bp downstream
Tssr37907	transcription start site region 37907	1158 bp downstream
Usp1	ubiquitin specific peptidase 1	Intron