rs228165735 SNP Detail

Summary

• ID
  rs228165735
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCCGT CCCCTCAGCC
  CGCGGGCCGC ACGCGGGTGC TTGCCGTCCG CACTCACCTG CCCGCTTCGT CTTCGCGCAG
  CGGCGGCGCC ACACTCCGGC CGGGACCCCA CCGTCCGCCT CAACCAACCC CCAGGCGGCG
  GCGGCGGCGG TGGCGGCGGC GGCCGGACGG GAGGGGCTGG ACGGCAGCCA GAGACAGCCC
  S
  GCCGCCTAGG CCCAACCCGG CTCCGCCCGC CCCTGGGCCC CGCCCACGGG CCGCCGCCGC
  CGTTCATTGG CCCGCACCTA ACACGCCTCG GCGCGGCTCC GCCCCGCCGC CCATCCGCCC
  GCCAGCCAGG GTGCTGATCA GCCATTGGAC ATCAGCAACC GGGGCGGAGC CGTATCCGAA
  GACTCGATTG GTTAGATCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387282950	MGP_WTSI_12_109417506	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228165735					SNP	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387282950	MGP_WTSI_12_109417506	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145555 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccnk	cyclin K			mRNA-UTR
Cpgi5076	CpG island 5076			within coordinates
Rr403488	regulatory region 403488			33 bp upstream
Rr472439	regulatory region 472439			91 bp distal
Rr472440	regulatory region 472440			within coordinates
Rr472441	regulatory region 472441			453 bp proximal
Rr472442	regulatory region 472442			607 bp proximal
Setd3	SET domain containing 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr114948	transcription start site region 114948			799 bp downstream
Tssr114949	transcription start site region 114949			436 bp downstream
Tssr114950	transcription start site region 114950			162 bp downstream
Tssr114951	transcription start site region 114951			127 bp downstream
Tssr114952	transcription start site region 114952			247 bp upstream
Tssr114953	transcription start site region 114953			497 bp upstream
Tssr114954	transcription start site region 114954			612 bp upstream
Tssr117676	transcription start site region 117676			71 bp upstream
Tssr117677	transcription start site region 117677			within coordinates