rs228171283 SNP Detail

Summary

• ID
  rs228171283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26317080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGTGT GTATGAATGT
  GTGTGATGTA TGTACATGTG TATGAGTGTG TATGTGTAGT GTATGCACTG TATATGTATG
  TAACATGTGT GTATGTGTAA TCTATGTACA TGTATATATG TGTGTGCTAT ATGTGTGTGT
  ATGAGTGTTC CTGTCTGATG TGTGTGGTGT ATGTACATGT GTATATGTGT GTGATATAGG
  W
  GTGTGTATGA GTGTACATGT GTGATATAGG CACATGTGTA TGTCTCTGCA CAAAGGCCAG
  AAGAAGTCAT TGGCTGTCCT TCCCCATCAC TTTCCACCTT ATTCTTTGTG GTAGAGCATC
  TCCCAGAACC TCGAGCTCTT GTTTCTTGTA GGAAACTGAC AGTGAGCAAC CCCTCAATCC
  TCCTGTCCTC ACTACATCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397891244	MGP_WTSI_17_26235051	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228171283					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397891244	MGP_WTSI_17_26235051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26317080 () rs orientation: forward

Symbol	Name	Function Class
Gm8186	predicted gene 8186	885 bp downstream
Tssr146918	transcription start site region 146918	1151 bp downstream