rs228175567 SNP Detail

Summary

• ID
  rs228175567
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156056173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACATCA ATTTTTAACC
  ATCCTCATGT CCCAGCATCC CCCAGAGCTG AGGTAATAGA GATGCATGGG ATACCCAGCT
  TGTTGGATGG GTGCTGGGAT CTGATCTGCC CAGGGAACGC TCTCAACCAC TGAGCCATCT
  TTCCAGCCCT ACACTGGACT TCTTACGAAT TTAAGACTGG CATTTCCTGA GAAAGCTGTA
  T
  CAACCACCTC CGGTCTCTGG CTGAAGATGA AGAACTCCCT GGGATGCTTG CAGTGTAACA
  GAGAGAAGGA ATGTTGCCTT GGTCAGGGTT TGCATCACTA AGATGTAACA CCCTGACCAA
  AAACAACTTG GGAAGGAAAG GGTTTATTTG GCTTAACTTC CATATCACCG TTCATCTCTG
  AAGGCAGTCA GGCAAGAACT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	LG/J	LP/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss352032912	MGP_WTSI_1_158158733	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	LG/J	LP/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs228175567					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352032912	MGP_WTSI_1_158158733	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156056173 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	1310 bp upstream
Rr421145	regulatory region 421145	1367 bp distal
Rr421146	regulatory region 421146	730 bp proximal
Rr421147	regulatory region 421147	868 bp proximal
Rr421148	regulatory region 421148	1016 bp proximal
Rr421149	regulatory region 421149	1136 bp proximal