rs228176044 SNP Detail

Summary

• ID
  rs228176044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCAGC AACCCTTCCA
  CTCTGAGGTC AAAACTCTTC TAATCCAAAC CCCGATCCCA TTCATAGGAA ACTGAGGCCT
  AGAAAAGTCC CAGTTAGTTA AAGGCAAAGT AAAGACTTGA ACCCACCATT GCCTTTCGAT
  TTGAATGATA AGTACTGGCA TTCCACGGGG GGGGGGGGGG GGGGGGGGCA GGGAGGGGGG
  Y
  ACAGAGGGAG GAGCTAAAAA TTCTATGTCA AAGACGTGCT TACTTTAAAA ATGGCAGCCA
  TACAATCTGT CTCTTCTTTT GGAAATATTA ATATGACAGA TTTTCATCTT GCTGTTGCTA
  CATGACGAAC ACGGGACCTA ATCTGCCGGG TGTTTTCTAG GCCAGAGTGG AGGAAGGGTC
  TGGGTTCAGG TGGAGCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	PL/J	SJL/J	SWR/J
ss358949075	MGP_WTSI_3_97691671	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	PL/J	SJL/J	SWR/J
rs228176044					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949075	MGP_WTSI_3_97691671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	427 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	949 bp proximal
Tssr34685	transcription start site region 34685	880 bp downstream
Tssr34686	transcription start site region 34686	938 bp downstream
Tssr34687	transcription start site region 34687	1079 bp downstream
Tssr34688	transcription start site region 34688	1163 bp downstream