rs228187252 SNP Detail

Summary

• ID
  rs228187252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93871825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCCGGCA TGCATCGCGA CCCACGCCCC
  TTTCCGACCT GCTTATTGGA GAAGAGGGTG AGCGTGTAGG CTGGAGGGGC GGGAGCGGGC
  GGGCGTTCCA GAGCTCCTAT TGGAGAGAGC TATGGCTTTT GTCTGCCTTT TACATCCCCT
  R
  ACTACTAGGG GGCGCCTGGA GCGCGGATTT TTCTCTCAAG TTGAGGTGGG GCGCGCGTCC
  GCGAAGCCGC TGCGATCTCC TCTCGTGCGC GCGCCTGGCG ATCGTCCCGG AGCGCGGCGG
  AGCGGCGCTC GTGCACGTCC CCCTGTCGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323407273	CHEV_10_93498708	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228187252					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93871825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	within coordinates
Fgd6	FYVE, RhoGEF and PH domain containing 6	38 bp upstream
Gm49628	predicted gene, 49628	162 bp upstream
Rr402165	regulatory region 402165	within coordinates
Rr437370	regulatory region 437370	269 bp distal
Rr437371	regulatory region 437371	within coordinates
Rr437372	regulatory region 437372	within coordinates
Rr437373	regulatory region 437373	49 bp proximal
Tssr3327	transcription start site region 3327	401 bp upstream
Tssr95293	transcription start site region 95293	492 bp downstream
Tssr95294	transcription start site region 95294	81 bp upstream
Tssr95295	transcription start site region 95295	94 bp upstream
Tssr95296	transcription start site region 95296	983 bp upstream
Tssr98985	transcription start site region 98985	194 bp upstream
Tssr98986	transcription start site region 98986	176 bp upstream
Tssr98987	transcription start site region 98987	147 bp upstream
Tssr98988	transcription start site region 98988	760 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	164 bp upstream