rs228188289 SNP Detail

Summary

• ID
  rs228188289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160902138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGTAAGA ATGTGCATGT AAGAGAACAA
  TGTGCATGAA TTAACttttt atatattttt tttatatttt tttttCTTCT TGTTCCGGCC
  TCGCTATCTC AGGCCCaaag atttatttat ttattttatg tattagtaca ctgtagctgt
  Y
  ttcagacaca ccagaaaagg gcgtcagatc tcattatgga tggttatgag ccaccatgtg
  gttgctggga tttgaatcag gacctctggc agagcagtca gtgctcttaa ctgcccagcc
  gtctctccag tcccCTGACT TTTTAGTGAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320080219	CHEV_1_163004699	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228188289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160902138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1719 bp upstream
Rr421753	regulatory region 421753			1823 bp distal
Rr421754	regulatory region 421754			1666 bp proximal