rs228189011 SNP Detail

Summary

• ID
  rs228189011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTATAT GTCTTCCCCA
  AGGTTTTGGT TTTCCTAGGG GCTTGATTTC CATTGAATCT GAGTATGAAT ATACATGTTG
  GAAAAGGGGG TTTCTGTTTA AAAAAGCATA AACTCCAGAA GGGTGTCTCA CCCCTAAAGC
  CAACCTTAGT GCTCCTGGCC ACACTAGCTG CTGGTGAAGC TGAATCCCAG ATTTGCCAGA
  R
  TCTGGCCAGC CTGGGAGGGA GGCGCTGCCA GTATCAGAAG CTGGGGAAAG GCAGCACACG
  TCATAGAATG TAGGATAAAG GAGGTGAGGA AACTGAGGTT AGGGTTGGGG AGTGTCTTGC
  TGCATGTGCC TCAGTGAAGG CTGTGGACAC TTTGTCAACT GCATTTCTAC ACCAGCCACA
  TCCTGCAAAG TAGGATGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373462621	MGP_WTSI_7_150251454	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228189011					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373462621	MGP_WTSI_7_150251454	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619286 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Rr366644	regulatory region 366644	1792 bp downstream
Tssr70273	transcription start site region 70273	590 bp downstream
Tssr70274	transcription start site region 70274	572 bp downstream
Tssr70275	transcription start site region 70275	205 bp upstream
Tssr70276	transcription start site region 70276	235 bp upstream
Tssr70277	transcription start site region 70277	384 bp upstream
Tssr70278	transcription start site region 70278	1181 bp upstream
Tssr70279	transcription start site region 70279	1816 bp upstream
Tssr70280	transcription start site region 70280	1852 bp upstream
Tssr70281	transcription start site region 70281	1986 bp upstream