rs228190784 SNP Detail

Summary

• ID
  rs228190784
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61207390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCAGCC AGGCACTTGT
  GACTCTGTCT TAAAAAAAAA AAAAAGCAGG CGATTTCCTT TGACAAAGTG GTTTGTAGTT
  GTTCTTAAGA GGATTAAGCA AGCACTTATT TCCCTGGGAC ACAAGGTAGA CAGCCCCGAG
  TGCTACTGGA GAGGTGGAGA TAAGGTACTA GGGGCGGGGC GTGGGGGTGG GTGGGTGGGT
  G
  GGGCAGCTAG GAGAGGGAGC AGCTGGGGGA GGGGATTCCC AGGAGAGTAC AAAATGGTAA
  CAGCAGAGAC ACGTGGACTT CCGGGTAGGA CTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAATGT GTGAGAGAGA GAGAGAGAGA
  CAGAGAGAGA GAGAAAGATC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss377773583	MGP_WTSI_9_61147915	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs228190784					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377773583	MGP_WTSI_9_61147915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61207390 () rs orientation: forward

Symbol	Name	Function Class
Rr201094	regulatory region 201094	1990 bp distal
Rr204421	regulatory region 204421	489 bp proximal
Rr209972	regulatory region 209972	within coordinates