rs228192103 SNP Detail

Summary

• ID
  rs228192103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24033477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACACTT TAAAACCTTG
  TGCCCATTTG TGATATTTTA AGTCAGTCCA TATTCAGGTG AAAGTTATTG TCACCCAAAC
  TTTCTCTTTT TGTTTAATTA TACCTTTTTT GGGTGGTGTT GTAGTGTTCA TTTGCAACCC
  ATACACAACG TCAGACACTT TCCCTTGAAA AGAAAAAAAC ATTCAATAGA GATGACTTGC
  Y
  TGATGAGTTT AAAACACTCA TCAAAAGATA TTGAGTAAGT TTAAGAGAAC AATGTACAAA
  GCAAAAAAAA AATTAAGAGG TAAGATAAAA AAAAAGGAAA ATGACTTAGT AGGTGAGTAA
  TTGGTTGCTA GTGATAGTCT ATGTGTAACC CCAGTATGCA AAATGGAGAC AGGGCTGTCT
  GTCTATAAGG TGTACCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397842711	MGP_WTSI_17_23951470	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228192103					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842711	MGP_WTSI_17_23951470	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24033477 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	1003 bp upstream
Rr340682	regulatory region 340682	1877 bp distal
Rr340683	regulatory region 340683	1124 bp proximal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142963	transcription start site region 142963	1981 bp downstream
Tssr142964	transcription start site region 142964	1037 bp downstream
Tssr142965	transcription start site region 142965	613 bp upstream
Tssr142966	transcription start site region 142966	693 bp upstream
Tssr142967	transcription start site region 142967	769 bp upstream
Tssr142968	transcription start site region 142968	784 bp upstream
Tssr142969	transcription start site region 142969	1552 bp upstream
Tssr142970	transcription start site region 142970	1581 bp upstream
Tssr142971	transcription start site region 142971	1649 bp upstream
Tssr142972	transcription start site region 142972	1694 bp upstream
Tssr142973	transcription start site region 142973	1708 bp upstream
Tssr142974	transcription start site region 142974	1745 bp upstream
Tssr142975	transcription start site region 142975	1769 bp upstream
Tssr142976	transcription start site region 142976	1797 bp upstream
Tssr142977	transcription start site region 142977	1855 bp upstream
Tssr142978	transcription start site region 142978	1900 bp upstream
Tssr146670	transcription start site region 146670	738 bp downstream