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rs228197128 SNP Detail
Summary
  • ID
    rs228197128
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:75062023 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCACAAGC AAGGGTGTCT
    CTGATGTCTC TGTTTTAAAT GTTTTCTCCT TTTAATGGGG TTAGATCGTG CGAGTCTGGA
    GAGAAAGCTC TGTATGTGTT TTACACAATG GAGTTTATCC GCTGGTTGAC CCATAAGGAG
    GTCGGCTGGG TCTTCAGTTC CTTCTTGTTC TATCCCTCTC CACCGACTCA AGCCCTTGTT
    R
    TATCGCTATG GGGCCAACCA CATAAACCTT GCCCAAGTTT CACTGTGTAC TCCCCTCCCC
    TCCCCTCCCC TTCTCTCCTC TCCTCTCCTC CACGCCCCAC CACCACCACC ACCACAGTTT
    CAAGTCTACG GCTAGCCTCG AACTCACAAA GGCGTCTACT TCCCACGTAC AAGGATGCGC
    ACCACCATGC CCCTCCTCTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383894001 MGP_WTSI_11_74984699 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228197128 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss383894001 MGP_WTSI_11_74984699 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:75062023 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700016P03Rik RIKEN cDNA 1700016P03 gene 811 bp upstream
Cpgi3251 CpG island 3251 1784 bp distal
Cpgi3252 CpG island 3252 274 bp distal
Cpgi3253 CpG island 3253 136 bp proximal
Cpgi3254 CpG island 3254 879 bp proximal
Hic1 hypermethylated in cancer 1 1678 bp upstream
Rr402719 regulatory region 402719 1801 bp upstream
Rr451074 regulatory region 451074 1965 bp distal
Rr451075 regulatory region 451075 1923 bp distal
Rr451076 regulatory region 451076 1188 bp distal
Rr451077 regulatory region 451077 526 bp distal
Rr451078 regulatory region 451078 788 bp proximal
Tssr102928 transcription start site region 102928 1247 bp upstream
Tssr102929 transcription start site region 102929 1274 bp upstream
Tssr102930 transcription start site region 102930 1356 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory