rs228208276 SNP Detail

Summary

• ID
  rs228208276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106363115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCCACG CGCGACCCGG
  CGAGGGCGCG GGAGGGCGCG TGCGGCGTGA CGCCGCGCCT CGCGGCGCAT CCCCGTGACG
  CCATCGCGCC GGCTTTTGAA AGTTGGCGCC CGGGGCCGCC TCCCATGCTG CCCTGCGCCA
  ACCCCTCCCC TCACCTTTCC TCCCCCGCCC TCGTCGCCGC CGGCCGGCCC CCCCCACCCG
  R
  CTCTTCCCTT ATCAGCACCC GCGGCCCCGG CAGCGCCGAC GCAGGCGCAC TGCACCGCGC
  CGCCGCCATT TTGTGTCCGA GCCTGTGGAG CGATTAAACC GTGCGCGGAG CTGCTTCTTT
  GGCGGCAGCG GCGACCAGCA GCAGCCGGTG CGGGCGCGCG GAGCCGGCCG GGGACGCCAG
  GTGGCCGGAG CGGTGGAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375916404	MGP_WTSI_8_108160383	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228208276					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375916404	MGP_WTSI_8_108160383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106363115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	within coordinates
Ctcf	CCCTC-binding factor	85 bp upstream
Gm5914	predicted gene 5914	within coordinates
Gm38384	predicted gene, 38384	1612 bp downstream
Rr185893	regulatory region 185893	within coordinates
Tssr79169	transcription start site region 79169	681 bp downstream
Tssr79170	transcription start site region 79170	5 bp upstream
Tssr79171	transcription start site region 79171	26 bp upstream
Tssr79172	transcription start site region 79172	107 bp upstream
Tssr79173	transcription start site region 79173	443 bp upstream
Tssr82678	transcription start site region 82678	1611 bp upstream
Tssr82679	transcription start site region 82679	306 bp upstream
Tssr82680	transcription start site region 82680	833 bp downstream
Tssr82681	transcription start site region 82681	880 bp downstream
Tssr82682	transcription start site region 82682	920 bp downstream
Tssr82683	transcription start site region 82683	1424 bp downstream