rs228215425 SNP Detail

Summary

• ID
  rs228215425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77105168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATTTCAT CACCTTAGAC
  ATGCTGAACA AAAATGTTCT ATACTTAACT ACAGATGATA TATATCTTGA CCATTAACCT
  ACAGTTTAGA AAAAGCATGG ACCATGTCTC ATTTTTTTCT TTTGCTTGAA GATATTTCCT
  GTACATAATA TACATTCAAC AAGGCCTTTA TGAACTCAGA ATACACTTCA GAGAATAGAA
  R
  ATTATCTTGA CTGCATGTAG GACCTTTTAA TTTGTATACA TTATCTCATT TGATTATGAA
  AGTCCTGTAA GTTAGGGTTT CATCATAGAG AATAAGGAAC TACAGCTCAA AAAGTTCAAC
  TCATTTGCAT AAGGTTTTAC ACAGCTGGAA CTAGAAGCTA GGTCTGACTC ACAGCAGTGC
  TTGGTCTCAT TGTAAGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755101	CHEV_11_77027844	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228215425					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77105168 () rs orientation: forward

Symbol	Name	Function Class
6330571C24Rik	RIKEN cDNA 6330571C24 gene	1136 bp upstream
Cpgi3303	CpG island 3303	1351 bp proximal
Gm45027	predicted gene 45027	within coordinates
Rr402749	regulatory region 402749	within coordinates
Rr402750	regulatory region 402750	402 bp upstream
Rr451639	regulatory region 451639	within coordinates
Rr451640	regulatory region 451640	545 bp proximal
Rr451641	regulatory region 451641	1455 bp proximal
Rr451642	regulatory region 451642	1834 bp proximal
Ssh2	slingshot protein phosphatase 2	1945 bp upstream
Tssr103125	transcription start site region 103125	1829 bp upstream
Tssr103126	transcription start site region 103126	1838 bp upstream