rs228216673 SNP Detail

Summary

• ID
  rs228216673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60225954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCAGAT CTTTTGCAGT
  CCCAATCATT CAGTATTTCC TACCTGTAGG ACTTCTAGAG TCCTTTATTT CATGGCAGTC
  AACTGTAGCT TTTCCAGTCT CTTGTACTGC ATTTTCAGTT ATATCTATAA ATGTCTTCTA
  AATCTTGATT TTCACAGTAC CTTTTAAAAT CAAAGTTATT ATTTGACTAT TTCATACATG
  W
  ATATATAATA TTTTATTTTC ACTCTAGTAC TTATCCTTTC TAATCTCCTT ATCCCTGTCA
  GTATTCATCC CCACTATAAG TCCTTTCTCT ACATTCAAAA CTTTTTATTT TGTGATCCAC
  TTAGTTTAAC CAGAGCCATT CATATGTCCA CGGGTGTACA ATGATACTTT GAAGTATGAG
  AGGCTCACAA GAGCCTCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403586313	MGP_WTSI_X_58435523	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228216673					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403586313	MGP_WTSI_X_58435523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60225954 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	1657 bp downstream
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	1658 bp upstream
Tssr161076	transcription start site region 161076	1220 bp downstream
Tssr161077	transcription start site region 161077	895 bp upstream
Tssr161078	transcription start site region 161078	913 bp upstream
Tssr161079	transcription start site region 161079	940 bp upstream
Tssr161080	transcription start site region 161080	974 bp upstream
Tssr161081	transcription start site region 161081	1109 bp upstream
Tssr161082	transcription start site region 161082	1127 bp upstream
Tssr161083	transcription start site region 161083	1204 bp upstream
Tssr161084	transcription start site region 161084	1329 bp upstream
Tssr161085	transcription start site region 161085	1457 bp upstream
Tssr161086	transcription start site region 161086	1520 bp upstream
Tssr161087	transcription start site region 161087	1542 bp upstream
Tssr161088	transcription start site region 161088	1568 bp upstream
Tssr161089	transcription start site region 161089	1591 bp upstream