rs228217797 SNP Detail

Summary

• ID
  rs228217797
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149439454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCACC CACACACACA
  CACACACATA TGCGCGTGCA CACACACACG CACGCGCGCA TGATAACAGG TTTTCCAAAT
  GCAGCTGGTC CTCAAGGCCC TCAATACGCA TGCGCTATGG TGGACAGGAC CATTCTAACC
  ATCTCATGTC CACATATGTC CCCCGCTCTC AGAGCTACAG AACATCTCGA TCCCACCGCC
  T
  CCTCCTCCTA CATCATTTCT CAGCCCGTCC CCCCACCCCA GGCTCCACAG GGCCTCTTCG
  CGCCACCCCC TCCTACCACC ATCCCACCCC ACCCCCGCCC CCATTCCTGT GCGGCCGCGC
  CAGCCCGCGC CAACCATCAG CCACTCACTC AGGCTGTGGT TCCGCAGTCC TCCGCACCTC
  CCACCCTCCT CAAGCCCCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss404874783	MGP_WTSI_X_147091001	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs228217797					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404874783	MGP_WTSI_X_147091001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149439454 () rs orientation: forward

Symbol	Name	Function Class
Rr694335	regulatory region 694335	40 bp distal
Rr694336	regulatory region 694336	931 bp proximal
Tro	trophinin	within coordinates
Tssr164370	transcription start site region 164370	1546 bp upstream
Tssr164371	transcription start site region 164371	862 bp upstream
Tssr164372	transcription start site region 164372	664 bp downstream
Tssr164373	transcription start site region 164373	908 bp downstream
Tssr164374	transcription start site region 164374	934 bp downstream