rs228223107 SNP Detail

Summary

• ID
  rs228223107
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:46925481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAAGGAA CCATCGGTTT
  GGAGCAATGT GGTGAGGTGT GACAACAGAA AACAGACAGG GCCGGATCCT GGGAGATGTT
  TTTTCTTGTA GTTCAGCTGA AGGAAATCCC TTTGTGGTGG GAGGCTGGTT CTTTGTAAAA
  GGTCTGCATT GAGATCTTGA GCTAAAATTA TATGACTGGA GAAGGTAAAA AAAAAAAAAA
  G
  AAAAAAAGCA ACACACCTTA TTCACTTACC TCTTCTAAAT TTACAGTAAA CAGACAAAAC
  TTAAAACAAA AACAAAAAAC CCCTCCCCAT TCGTGATTCT AAGCATTTTC ACATGTTTCC
  TTCCTGTCTC TGTTATTTAT ATTTTATCAG TGTTTTATTA TTATTACAGC CTGACTGAAA
  TCATGAGGCC TTGGAAATTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss374534996	MGP_WTSI_8_47557798	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs228223107					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374534996	MGP_WTSI_8_47557798	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46925481 () rs orientation: forward

Symbol	Name	Function Class
Acsl1	acyl-CoA synthetase long-chain family member 1	within coordinates
Cpgi20317	CpG island 20317	634 bp distal
Gm45244	predicted gene 45244	within coordinates
Gm64268	predicted gene, 64268	1480 bp upstream
Rr186591	regulatory region 186591	within coordinates
Rr368530	regulatory region 368530	1587 bp downstream
Tssr2561	transcription start site region 2561	727 bp downstream
Tssr77199	transcription start site region 77199	1366 bp downstream
Tssr77200	transcription start site region 77200	1335 bp downstream
Tssr77201	transcription start site region 77201	1258 bp downstream
Tssr77202	transcription start site region 77202	740 bp downstream
Tssr77203	transcription start site region 77203	659 bp downstream
Tssr77204	transcription start site region 77204	543 bp downstream
Tssr77205	transcription start site region 77205	491 bp downstream
Tssr77206	transcription start site region 77206	51 bp downstream
Tssr77207	transcription start site region 77207	32 bp downstream
Tssr77208	transcription start site region 77208	1932 bp upstream
Tssr81204	transcription start site region 81204	828 bp upstream
Tssr81205	transcription start site region 81205	793 bp upstream
Tssr81206	transcription start site region 81206	14 bp upstream