rs228226038 SNP Detail

Summary

• ID
  rs228226038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28423468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GGCAGGCTGC CAGGCCTCCC
  Y
  AGACTTCAGT TCTTCCGCAA ACGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321773889	CHEV_6_28373469	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228226038					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28423468 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	135 bp upstream
Cpgi17215	CpG island 17215	1506 bp distal
Cpgi17216	CpG island 17216	within coordinates
Gcc1	golgi coiled coil 1	Intron
Rr399587	regulatory region 399587	1554 bp downstream
Rr627380	regulatory region 627380	1255 bp distal
Rr627381	regulatory region 627381	1546 bp distal
Rr627382	regulatory region 627382	within coordinates
Rr627383	regulatory region 627383	662 bp proximal
Tssr55188	transcription start site region 55188	1663 bp downstream
Tssr55189	transcription start site region 55189	65 bp upstream
Tssr55190	transcription start site region 55190	70 bp upstream
Tssr55191	transcription start site region 55191	868 bp upstream
Tssr55192	transcription start site region 55192	1103 bp upstream
Tssr60058	transcription start site region 60058	1927 bp upstream
Tssr60059	transcription start site region 60059	1877 bp upstream
Tssr60060	transcription start site region 60060	1728 bp upstream