rs228229762 SNP Detail

Summary

• ID
  rs228229762
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCAAATG TAAAAAGTAT
  CCCACTCAAC CCACGATCCC AAAATGGGAA AACAAAACAA AATGAAAACA AAACAAAACA
  AAACAAAATA AAAAACCAAA AACCCGTGAT TAACATCTGG AAGTGGTAGC CCATAGCAGT
  AATCTCAGCA CTTGAGAAGG TAAGACTGAA GACCACATGT TTGGACTAGT ATGGGCTACA
  W
  AGTAACTTCC AGACCAGGCT TGTATGCATG ACAGGGAGGA CAAAGGCTCA GCCTGTAGGG
  TGCTTGCCTA GAGCGCACAA GGCCTGGGGT CTGTCTATCC CATTAGCTCC TACACTGACA
  TGTGGAAGCA GGAGCTCAAA TGGTCAAGGG CATCTTCAGC TACAGAGTGA GTCTGAAGAC
  AGCCTGAGAT ACAGGAGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177677	MGP_WTSI_7_52717777	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228229762					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177677	MGP_WTSI_7_52717777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111831 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	944 bp upstream
Gm73431	predicted gene, 73431	757 bp downstream
Rr380754	regulatory region 380754	975 bp downstream
Rr646452	regulatory region 646452	1388 bp distal
Rr646453	regulatory region 646453	955 bp distal
Rr646454	regulatory region 646454	458 bp distal
Rr646455	regulatory region 646455	632 bp proximal
Tssr66542	transcription start site region 66542	1307 bp downstream
Tssr72399	transcription start site region 72399	1461 bp upstream
Tssr72400	transcription start site region 72400	1430 bp upstream