rs228230001 SNP Detail

Summary

• ID
  rs228230001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57720127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT GGGTTGGAAG GGTGTGTCTT
  Y
  GGGGGCTTGG TCTTCTCCAG TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383506445	MGP_WTSI_11_57642803	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	T	T	T	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C	T	C	C	T	C	T	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228230001					SNP	C	C	C	C	T	C	T	T	T	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	T	C	T	C	C	T	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383506445	MGP_WTSI_11_57642803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57720127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	941 bp distal
Cpgi2911	CpG island 2911	within coordinates
Cpgi2912	CpG island 2912	1934 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1544 bp distal
Rr447812	regulatory region 447812	784 bp distal
Rr447813	regulatory region 447813	within coordinates
Rr447814	regulatory region 447814	184 bp proximal
Tssr3506	transcription start site region 3506	30 bp upstream
Tssr108123	transcription start site region 108123	338 bp upstream
Tssr108124	transcription start site region 108124	281 bp upstream
Tssr108125	transcription start site region 108125	236 bp upstream
Tssr108126	transcription start site region 108126	55 bp upstream
Tssr108127	transcription start site region 108127	7 bp downstream
Tssr108128	transcription start site region 108128	14 bp downstream
Tssr108129	transcription start site region 108129	145 bp downstream