rs228244965 SNP Detail

Summary

• ID
  rs228244965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184544270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGACT TCACCCCATC CCAAGTCTCA
  R
  GGTGAGAGAA GGAGATGGCT GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169576	CHEV_1_186635952	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228244965					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184544270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	736 bp distal
Gm70890	predicted gene, 70890	within coordinates
Mtarc1	mitochondrial amidoxime reducing component 1	876 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	995 bp downstream
Rr425290	regulatory region 425290	139 bp distal
Rr425291	regulatory region 425291	within coordinates
Rr425292	regulatory region 425292	275 bp proximal
Rr425293	regulatory region 425293	423 bp proximal
Tssr15650	transcription start site region 15650	1082 bp upstream
Tssr15651	transcription start site region 15651	910 bp upstream
Tssr15652	transcription start site region 15652	870 bp upstream
Tssr15653	transcription start site region 15653	809 bp upstream
Tssr15654	transcription start site region 15654	770 bp upstream
Tssr15655	transcription start site region 15655	759 bp upstream