rs228245462 SNP Detail

Summary

• ID
  rs228245462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTTGCA TGCACAAAAC
  TACTTAAAAT GCTATAGAAA ACTGCCTTTA GGTATGTGTA TAAGATGATC ATGAAACAGA
  CAGAATTCAA GTTTAGACTT AAACCTCATC TAAGATGTAC CATTGTGTAC ATGCAAATAT
  TCAGATTTGG GGGGGGAGAC CCTCAAACCT GGGACACTCA AGGACTTCAG AGAAGAGGTA
  Y
  TCAGTCTACA GTATTACATG GACAGAGATT TGGGGAACAC CGAGTACAGC AACCTAACGA
  GTTTCTTTCT GGAGAGTTTT CTAGGGTCTT TTCATGGTGT CACAGGAAGC AGCAAGTGGG
  ACACACAACC TGTGGTATTA TTCAAACAGA TTCAACCACG ATGCCATTTT TCTCAAAGCA
  TTTTGTAAAA ATGGGGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864900	CHEV_3_107044226	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228245462					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148624 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	558 bp upstream
Prok1	prokineticin 1	1601 bp upstream
Rr582947	regulatory region 582947	216 bp proximal
Rr582948	regulatory region 582948	569 bp proximal
Tssr31192	transcription start site region 31192	481 bp upstream
Tssr31193	transcription start site region 31193	552 bp upstream
Tssr31194	transcription start site region 31194	607 bp upstream