rs228249961 SNP Detail

Summary

• ID
  rs228249961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCTATA TTCAGATCTC
  TGAGGTTTGA TAAGGACACT CCCAACGCCC AGGCACTCTG AATGTACCTC AGCCTGAATT
  AAACCATTAT CATGAACAAT GCCTGGTCTA TCCGTTTCCC CTTCATCCTC AGTATTCCTC
  CTTTAATCCC ATTTAGATTT TGGATTACTG GGCTGTCCCT GTCACACCCT GGGAGTCTAA
  R
  CTCATGTGCC CTCATGTGCT TTCCTCTGAA CCTGCAATAG GTGGTAGGAA AACCTCAAAT
  CCTTTTGGGA TTTGAGCTAG TTCCACAATT AGCATGAATA CATGATTTTA TTTATTTATT
  TATCTATTTA TTTATTGGCT TAGACCTGCC CTCAGTTGCT AACTCTTCTC TTAGATTTTC
  ACCTTCACCT CAGGTCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349352549	MGP_WTSI_1_40571514	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228249961					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349352549	MGP_WTSI_1_40571514	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553829 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	719 bp upstream
Rr410075	regulatory region 410075	245 bp proximal
Rr410076	regulatory region 410076	704 bp proximal
Tssr65	transcription start site region 65	826 bp upstream
Tssr6477	transcription start site region 6477	708 bp upstream
Tssr6478	transcription start site region 6478	773 bp upstream
Tssr6479	transcription start site region 6479	802 bp upstream
Tssr11438	transcription start site region 11438	546 bp downstream
Tssr11439	transcription start site region 11439	1778 bp downstream
Tssr11440	transcription start site region 11440	1788 bp downstream
Tssr11441	transcription start site region 11441	1806 bp downstream
Tssr11442	transcription start site region 11442	1822 bp downstream
Tssr11443	transcription start site region 11443	1853 bp downstream