rs228250415 SNP Detail

Summary

• ID
  rs228250415
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCAAAC TGAAACTTCT
  GTTCGTACTG GGAAGGCATG CGGTTCAGTT GCACACCCCA CCCAAGAGCT TCTCTTCTTT
  CTTGTGACGT ATTTTCCCCT TATTTCCACG TGCTTTGTGG CTTGATGAAA TGATTTTGTA
  ATCCCCAGTT CACTCTGACC TGAAGTTCTT GCAACTGCAT TATGCAACCC CCTCCCCCCC
  S
  CCCCGCTGCC TGGGACCTGG TCTCTTGTCT GTGCTGTGAC CCTGCCCATA ATCTTGGAGA
  AGACACTTAT CCTTCCCCAC AGCACCCTGA GCCTGAAAAG GCCTGCATAG CTGCACTAGG
  TTGCTCCCTC CCAATAAGGA GGAGTCCAAG GAACTCCAGG AATTGCCTGC TAGAGCCCAT
  CCCTCCTCCC AGGCCCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370920772	MGP_WTSI_7_31817084	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228250415					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920772	MGP_WTSI_7_31817084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731490 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	663 bp downstream
Rr644976	regulatory region 644976	1127 bp distal
Rr644977	regulatory region 644977	within coordinates
Rr644978	regulatory region 644978	1428 bp proximal
Tssr65829	transcription start site region 65829	788 bp upstream