rs228251054 SNP Detail

Summary

• ID
  rs228251054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43018572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATCCG TGTAGGTGGG
  AAGAGACTTC GGCCATTTTG TGGAAATCAA ATCTAATAAA CAGTGGGTGT GGAAAGGAAA
  TAATTACCTC TTAATAATGC TGTTTCTAAG TCATTCCACA ACAGTTCGCG AAACGATCGG
  ATCATCACCC CTGAATAGAT GCATGAGCTC AAGGTGACGT TAGAATGGGG GGCAAAGGGG
  R
  AAAGATAAAC AGAAGCCTGA AATGACTCTC TCGCTAGATT TTTTTTTTTT TAAGTTCGGG
  GCACAGCCAG CTAATTTTGT AATGTTTATT TTTGGAAAGA ATAGAAGCAG ATTGGAGTTC
  CAAGCCACTT TCCTAACGAT CAGACCTGGA CACGTTGCCA TCTGCTGGTA AATCCCAACA
  TGGCAATTCT AGCCTGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377380677	MGP_WTSI_9_42915360	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228251054					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377380677	MGP_WTSI_9_42915360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43018572 () rs orientation: forward

Symbol	Name	Function Class
Arhgef12	Rho guanine nucleotide exchange factor 12	1503 bp upstream
Cpgi21624	CpG island 21624	579 bp distal
Rr677324	regulatory region 677324	1802 bp distal
Rr677325	regulatory region 677325	800 bp distal
Rr677326	regulatory region 677326	152 bp proximal
Rr677327	regulatory region 677327	201 bp proximal
Tlcd5	TLC domain containing 5	1373 bp downstream
Tssr89074	transcription start site region 89074	1484 bp upstream
Tssr89075	transcription start site region 89075	1403 bp upstream
Tssr89076	transcription start site region 89076	1251 bp upstream
Tssr89077	transcription start site region 89077	1181 bp upstream
Tssr89078	transcription start site region 89078	1109 bp upstream
Tssr89079	transcription start site region 89079	1081 bp upstream
Tssr89080	transcription start site region 89080	254 bp upstream
Tssr89081	transcription start site region 89081	168 bp upstream
Tssr89082	transcription start site region 89082	135 bp upstream