rs228251105 SNP Detail

Summary

• ID
  rs228251105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:4232377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGACTA AACTGCAAAT
  TTATGTGTTT CAGATCAGGC AATTTCTGAA TGATGGATGA AATCTTAACT TCAAATACTT
  CCCATGAAAA AGTTCCTAGC TGCCTCCATG GTTACTATGA GTCAGCAGAG CAATATTCCA
  AAGAGAAAGT GTGGTGTGTG TGTGTATATG CATGTGTGGG GGAAGGGGGG TTAACGGGGG
  Y
  GGGGGGGGAT ATTAATTTGC AACAGGATCC AAAGCAAAGA ACCAACCTAA ACCACGGAAA
  TGCCGAGCCA CTTCCACAAT AGTCTACTCA CTTTGCCATC CCAGAGGGCA ACAGGGGTTA
  AACAGGATTA GAAAAACACA AAGCAAGGCC CAAGAAAGAA CTGAAAATGG GCAGGGGAAA
  GAAGCAGTCA ACAGCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	RF/J
ss390434135	MGP_WTSI_14_19069833	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	RF/J
rs228251105					SNP	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390434135	MGP_WTSI_14_19069833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4232377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6187	CpG island 6187	809 bp distal
Gm62505	predicted gene, 62505	800 bp upstream
Nr1d2	nuclear receptor subfamily 1, group D, member 2	within coordinates
Rr487195	regulatory region 487195	1798 bp distal
Rr487196	regulatory region 487196	1900 bp distal
Rr487197	regulatory region 487197	811 bp distal
Rr487198	regulatory region 487198	1195 bp distal
Rr487199	regulatory region 487199	310 bp distal
Tssr127524	transcription start site region 127524	1633 bp downstream
Tssr127525	transcription start site region 127525	1734 bp downstream