rs228259057 SNP Detail

Summary

• ID
  rs228259057
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86742670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGATTTA TCATATCTTT AAATTATGTG TATCTGTGAG
  GGGCTTGGGG GGGGGGGGGA TGTGCATCTG AGTGCAGTGC CCATAGAGGC CAGAAGGGGG
  A
  ATCCTACCCA CTAAAACTGC AATTCCAAAC AGTTGTGAGT CCCTCAATGA AGATCCTAGG
  AATCGCACTG GGCCCTCAGT AAAAGCAGAA TGGGCTCTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320829835	CHEV_3_86639285	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228259057					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86742670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579396	regulatory region 579396			1695 bp distal
Rr579397	regulatory region 579397			within coordinates