rs228265141 SNP Detail

Summary

• ID
  rs228265141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84350772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAAACA AAAAACAAAA
  AAAACAAAAA AAAAAACAAA ACAAAACAAA AAAAAACAAA ACAAAACAAA AAAACCTCCC
  AGTGCCTTCA GGAGCCAGAG ACCTAAATGG GTTAAGAGAT CAGTGAGAGT GAGTGGGTGG
  GAGCCATGGA CTCTAGAGGC GACAGTTTGC TACAAGCTTT GTTTCCCCAG CTCCCAGCAT
  Y
  CCCAGCACTG TGGCCAATTG TTACGTCCCA AGTGGAAAGA TTTGAAAGTA CTTCAAACCT
  TACACCAACG CCATGAAGTA AGTAGGTGTC GCCGGCTTCA CATCCATTTG TTAAGTGGGG
  AGACCCAGGC ATAGAATACA AGAAGTGTTT CCACGGGCAG ACAGATTGGT AGGGGTGTGG
  CTGGAGTTTG AACACAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323369357	CHEV_10_83977653	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228265141					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84350772 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	44 bp upstream
Gm34405	predicted gene, 34405	within coordinates
Rr436162	regulatory region 436162	871 bp distal
Rr436163	regulatory region 436163	370 bp distal
Rr436164	regulatory region 436164	631 bp distal
Rr436165	regulatory region 436165	602 bp distal
Rr436166	regulatory region 436166	468 bp proximal
Rr436167	regulatory region 436167	726 bp proximal
Rr436168	regulatory region 436168	1381 bp proximal
Tssr94890	transcription start site region 94890	1802 bp upstream