rs228271625 SNP Detail

Summary

• ID
  rs228271625
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123619775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAGGCTG AGTCATTAGA
  GGAGAGGCTG CCCTCAGGAA GAGAATCACC AAGATCTCAA GGATGTTTCC TTATGATCTT
  TGGTGTAATT AAATCCAGCT GGGCCATCAT CTTCCTTAAT GATTCTTCAG TTGTCAATTG
  CATTTTTCAA AAATTTACTC CAATGACTAA ACCCCAGTAA AACTGGGGAC TACTTAAAAC
  M
  ATAAAGCTAT GTATGAAAGG CACACTTACA CAGGGCCAAA TGTTCTCTAG TAACCTAGTG
  CTCAGCAGAC TGGAGCAAGT ACAGTACAAA GCCCATTTAG CACAAAAATA GACTATTAAA
  AACAGAGTTG GTATATGCCT AGTGGAGTAC TATGCAGTCA GCACTGGAGC CTCTCACCTC
  AGGTCTGAGC TTCACAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234318	CHEV_9_123699828	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228271625					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123619775 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	mRNA-UTR
Tssr92157	transcription start site region 92157	1344 bp downstream
Tssr92158	transcription start site region 92158	1359 bp downstream
Tssr92159	transcription start site region 92159	1367 bp downstream
Tssr92160	transcription start site region 92160	1760 bp downstream
Tssr92161	transcription start site region 92161	1777 bp downstream