rs228278741 SNP Detail

Summary

• ID
  rs228278741
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118577033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAC GAGGACGAAG AGGAAGCGGC
  S
  GAAGAGCCCC GGAGTCGTTG AATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320471582	CHEV_2_118572288	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228278741					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118577033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12091	CpG island 12091	within coordinates
Inafm2	InaF motif containing 2	within coordinates
Rr397215	regulatory region 397215	844 bp downstream
Rr563316	regulatory region 563316	784 bp distal
Rr563317	regulatory region 563317	1032 bp distal
Rr563318	regulatory region 563318	197 bp distal
Tssr19569	transcription start site region 19569	779 bp downstream
Tssr19570	transcription start site region 19570	753 bp downstream
Tssr19571	transcription start site region 19571	433 bp upstream
Tssr19572	transcription start site region 19572	711 bp upstream