rs228295939 SNP Detail

Summary

• ID
  rs228295939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51360280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGAGTAT TAGTATAGTC
  ATAGGAAGGA ATTTAACAGT CCCTTTCTTC CACTTAAAAT TTCTATTGTT GGAGCTTTCC
  CATCCTCCTA GCAGATGCTT TTTCAATTCA TGCAGCTCAA AGAGAGGCCA ACTTACAAGT
  GCTTTCAACA GCACCAGACC CAACACACAG AGATAGACAC CACCAGAAGA GATAATTCTT
  K
  TCAATAGACA CAGCATCTCA GCTGCCATAG ACCTCACTTC CACCTGATTG TCCCTGTCTT
  CACAGCTCTA ACCCAGAGGC TACCATCAAT GAAAAACACC TGTGTGAGAA TAAGAGGGCC
  CTGGGGACTA TATGCACTAA ACCTCAGTAT CAGAGGTCTG ATGGGGAGTG TGGTGGGTCA
  GGTCTTGGAG GAAAAGAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379654	MGP_WTSI_10_51203990	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228295939					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379654	MGP_WTSI_10_51203990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51360280 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93243	transcription start site region 93243	1571 bp downstream
Tssr93244	transcription start site region 93244	1300 bp downstream
Tssr93245	transcription start site region 93245	764 bp downstream
Tssr93246	transcription start site region 93246	579 bp downstream
Tssr93247	transcription start site region 93247	536 bp downstream
Tssr93248	transcription start site region 93248	495 bp downstream
Tssr93249	transcription start site region 93249	329 bp downstream
Tssr93250	transcription start site region 93250	125 bp upstream
Tssr93251	transcription start site region 93251	164 bp upstream
Tssr93252	transcription start site region 93252	267 bp upstream
Tssr93253	transcription start site region 93253	462 bp upstream
Tssr93254	transcription start site region 93254	589 bp upstream
Tssr93255	transcription start site region 93255	816 bp upstream
Tssr93256	transcription start site region 93256	928 bp upstream
Tssr93257	transcription start site region 93257	1291 bp upstream
Tssr93258	transcription start site region 93258	1526 bp upstream
Tssr93259	transcription start site region 93259	1568 bp upstream
Tssr97554	transcription start site region 97554	1565 bp downstream