rs228296565 SNP Detail

Summary

• ID
  rs228296565
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46386072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGGAAT GGGGACAAAG
  GGTTAATGGA TCCCTTGAGT AGTGAGGGGT TAACCCGGAT TAGGACAACC GAGAACTGGG
  GGTGTATACA GAAGCGGAGG GGGGACTGTA AGAGCGAACT GTAAACGTGG AGAAAGGAGG
  GGGCGCCTGT GGTGGGTCAT TAGTGGGCTT GGGGGAGCCA GGGGGCGGCT GGGGTGGGAT
  G
  GGGGGGGGAG TGAGGCGGGG CCTGGAGAGC ATTTGAGAGG GCTTTGGAGG GCACAAGACC
  GCGTAGTCTA GGGCGGTCCG GGAACCAGGA CGCCCCTGTG GGTTAGGAGG GAGCAAGATG
  AGGGCATTGT GCCTTTGATG AGGGAAGAGT TGAGGAGAGG CCTTCTTTCA GTCTTCTTTC
  GGGACCTTCC CGAGCGCAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595879	MGP_WTSI_19_46472123	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228296565					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595879	MGP_WTSI_19_46472123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46386072 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	1892 bp upstream
Cpgi11001	CpG island 11001	1731 bp distal
Cpgi11002	CpG island 11002	208 bp distal
Gm59146	predicted gene, 59146	1476 bp downstream
Rr406000	regulatory region 406000	1649 bp downstream
Rr406001	regulatory region 406001	706 bp downstream
Rr548728	regulatory region 548728	1906 bp distal
Rr548729	regulatory region 548729	1396 bp distal
Rr548730	regulatory region 548730	597 bp distal
Rr548731	regulatory region 548731	871 bp distal
Rr548732	regulatory region 548732	763 bp distal
Rr548733	regulatory region 548733	51 bp distal
Rr548734	regulatory region 548734	9 bp distal
Sufu	SUFU negative regulator of hedgehog signaling	within coordinates
Tssr156753	transcription start site region 156753	634 bp downstream
Tssr156754	transcription start site region 156754	600 bp downstream
Tssr159650	transcription start site region 159650	1877 bp upstream