rs228299227 SNP Detail

Summary

• ID
  rs228299227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT CGATGCTTCA AGGCAAGGTC
  R
  CCTCCTCTAG ATCTGGCTTC GTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324528922	CHEV_13_113080099	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228299227					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426425 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm55074	predicted gene, 55074	1230 bp upstream
Rr486330	regulatory region 486330	1061 bp distal
Rr486331	regulatory region 486331	259 bp distal
Tssr121099	transcription start site region 121099	1384 bp downstream
Tssr121100	transcription start site region 121100	1343 bp downstream
Tssr121101	transcription start site region 121101	1297 bp downstream
Tssr121102	transcription start site region 121102	1085 bp downstream
Tssr124046	transcription start site region 124046	739 bp upstream