rs228305443 SNP Detail

Summary

• ID
  rs228305443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56323729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGCCAT TTTCCCCCAC
  ATAACATAGT CATACTACTC TCTCCCAAAT AGAGACACGA TAAAATATTT TCTCTTCTTC
  CCCTCTGACA ACTCTGGGGA GGGGATCTTT GTTTTTTCAC ATAGTTTGTG ACCTGATCGT
  TGCCAAAACT CACTTGCAGT AGTATGAACT CTGCTTCCAT TGTTAACTGT TAATCTCTGT
  R
  ATAAGGCTAT TAACTCCTAA CTTGGAAGCC AAGAAAATGT ACCTCACCTG CAATTATAGT
  TTACTGAAAA AGTCACCAAA GAAAGTGCCA GGCACTTTGG AAAGTAATTA GGGTAGTCAG
  TGAATTGAAA GATCTAAAAT GCTCTGAGAT TACAAAAGAA GCCATCATGA AGTGAGTATC
  CAAGATTGCT CATGGAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377668694	MGP_WTSI_9_56264252	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228305443					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377668694	MGP_WTSI_9_56264252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56323729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	893 bp proximal
Gm36940	predicted gene, 36940	379 bp upstream
Peak1	pseudopodium-enriched atypical kinase 1	within coordinates
Rr195774	regulatory region 195774	1729 bp distal
Rr204231	regulatory region 204231	1730 bp distal
Rr206471	regulatory region 206471	within coordinates
Rr401386	regulatory region 401386	1566 bp upstream
Tssr85252	transcription start site region 85252	1942 bp upstream
Tssr85253	transcription start site region 85253	1970 bp upstream
Tssr89707	transcription start site region 89707	1578 bp downstream
Tssr89708	transcription start site region 89708	1616 bp downstream
Tssr89709	transcription start site region 89709	1654 bp downstream