rs228313301 SNP Detail

Summary

• ID
  rs228313301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3669458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACCAGGC TGTTCTCGAA
  CTCAGAAATC CGACTGCCTC TGCCTCCCAA GTGCTGGTAT TAAAGGCGTG CGCCACCGCA
  TGCCTGGCCT CATCTTTGTA TTTTTATCTC CATCTGAGCA CCCAACTCAG AGCTGAGCAA
  GTCCTGGTAT GTCTTAATGA ATGGAGACAT TGAATACAAG GAACATGGAC AGCTATTTAT
  R
  TGCAACTGTG TTGGAGTTGT GAGCATCTGA AGATGAAAAA AAGAAAAAAA AAACATTGTC
  ACTTCAAGGA GTTGTTAATA AAGTAGTGGA AGAGAACGTC GCTGACTGCA CCTAGCACAC
  TCAGATCGGT CAAGGCGGGA ACAAGCCAGT CTCCTGGTTT CACAAAAACA AGACACCTGT
  TTATTTCTCC TTTCACCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320204856	CHEV_2_3585693	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228313301					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3669458 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	within coordinates
Rr372694	regulatory region 372694	1008 bp upstream