rs228315349 SNP Detail

Summary

• ID
  rs228315349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC ACTTTTCCTT GACCTTGCAT
  R
  TGCCCCATTT CCTTTCTTGT GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322942714	CHEV_9_45071076	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228315349					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174291 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1703 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	1194 bp distal
Tssr84758	transcription start site region 84758	1889 bp upstream
Tssr89253	transcription start site region 89253	54 bp upstream
Tssr89254	transcription start site region 89254	within coordinates
Tssr89255	transcription start site region 89255	53 bp downstream
Tssr89256	transcription start site region 89256	77 bp downstream
Tssr89257	transcription start site region 89257	1183 bp downstream
Tssr89258	transcription start site region 89258	1224 bp downstream
Tssr89259	transcription start site region 89259	1247 bp downstream