rs228330367 SNP Detail

Summary

• ID
  rs228330367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30330672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACAACAG GTGCCTCTAA
  GAGGGAAGGA GCCTGGGGCT GGGGTAGGAG CACAGCACTT TGGGATGCAT ACCCTGCCTT
  TTCAACACTA ATCGGTGGGG AGAGTTAGCT GCAAGAGTCA GATAACTGCC TTCGGGACTG
  ACGAGGTATC AGACTTCGGT GTCTCCATAC TTTGTGTACT GGAGAAATGC TGGACAAACT
  R
  TCACTGCGCT GCATCCCCAA TTCTACCTTT ACATTTTTAA AGTTTGAGGC AGGGTCTTGT
  TGTTAAGTTA CCCAGCAGGT CATGAACTTG TAACCTTGCT GCTTGAGAGT CCCGAGGACA
  CAGGATTAGA AACCCAGGGC ACCACAATTG GCTGGCAATA AGCACTGGGC ATTGGTGCTC
  ATTTTATCTG ATGGGTTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390687004	MGP_WTSI_14_31421901	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228330367					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390687004	MGP_WTSI_14_31421901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30330672 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	871 bp distal
Rr292185	regulatory region 292185	within coordinates
Rr404042	regulatory region 404042	665 bp downstream
Tssr4363	transcription start site region 4363	941 bp upstream
Tssr124839	transcription start site region 124839	792 bp downstream
Tssr127873	transcription start site region 127873	911 bp upstream
Tssr127874	transcription start site region 127874	894 bp upstream
Tssr127875	transcription start site region 127875	891 bp upstream
Tssr127876	transcription start site region 127876	430 bp downstream