rs228345150 SNP Detail

Summary

• ID
  rs228345150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70408397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCTCTCC CCAGTGAAGC TTGAGCTGTG CACACACAGA
  CACACAGACA CACAGACACA CAGACACACA CACACACACA CAGTACTGGG GACTGCACCT
  R
  GAGTCTTGCA CATTCCAGGA AGACACTACC ACTGAACTAT ATCCCTAACC CATTTTATAC
  TTTAAAAAAA ATTTTTTAAA CGATTTTTAA TGTTGTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735931	CHEV_11_70331073	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228345150					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70408397 () rs orientation: forward

Symbol	Name	Function Class
Gltpd2	glycolipid transfer protein domain containing 2	1638 bp upstream
Gm12317	predicted gene 12317	154 bp downstream
Rr450316	regulatory region 450316	1329 bp distal
Rr450317	regulatory region 450317	727 bp distal
Rr450318	regulatory region 450318	1471 bp proximal
Tssr102724	transcription start site region 102724	1585 bp upstream
Tssr102725	transcription start site region 102725	1597 bp upstream
Tssr102726	transcription start site region 102726	1612 bp upstream