rs228350120 SNP Detail

Summary

• ID
  rs228350120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143576172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGTCTTG AGGATACAAG CTCTCTAGTG
  ATAACACATA GACTGCTCTG CAAGCAGGTC CTTTCTCCTC CAACTTCTTA TGACGGTTCA
  ACTGTATGAA TCCATTTAAA TACAGCTCAC TGAAATGTGT CCTAAATCTC CTTTACTAGC
  Y
  TCTATTATCA CTTTTCCTCT AAACAagtgg tcctcagccc tcctgatgct acaaaccttt
  aatacaattc ctcctgttgt gacctccaac taaaaaatca ttttcattgc tacttcataa
  ctgtaacttt gctgctgtta taaatgtaac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010255	CHEV_1_145547564	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228350120					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143576172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component			Intron
				Noncoding-Transcript-Variant
Cpgi835	CpG island 835			1622 bp proximal
Rr419927	regulatory region 419927			1996 bp proximal