rs228353674 SNP Detail

Summary

• ID
  rs228353674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGTGG AGGGGGAAAG
  GGCTCCGTGA GGAACTCAGC ATGGTGTTTT TGAAGACAGC ATTGGGACAA GAGCAGGACC
  CGGAGACCTC ACGTTTCTGT GGCCTGGATC ACTCAGTGCG GGTGGGGCAA GGCTCCTCCT
  GGCTTCTCTG GGCACCAGAG CCAGGGAGCC CACTCAGTGC CTGTCCTAGG CTCTTCCCAT
  Y
  CGATGAAGGC TGCTGTGACA CATTAGCTAT TGTTCCTGCT CCTCTAGGGA CACACAGAGG
  GCTGTTTGCC CCCAAGGCAG GGGATAGAGG GCAGGCATGG ATGTCACAGT CACAGTCTGT
  CCTGCTCCCA TGGGAACCTC CTCATGGTTC ATGAGTATCC CCTTAGAAAA TGGGGCACCA
  TTTCTGGTAG GTTGGGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318888	CHEV_4_130383439	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228353674					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554835 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1211 bp upstream
Gm69250	predicted gene, 69250	1429 bp upstream
Rr600596	regulatory region 600596	1121 bp proximal
Rr600597	regulatory region 600597	1440 bp proximal
Sdc3	syndecan 3	1206 bp downstream
Tssr39293	transcription start site region 39293	1646 bp downstream
Tssr39294	transcription start site region 39294	1486 bp downstream
Tssr39295	transcription start site region 39295	1321 bp downstream
Tssr39296	transcription start site region 39296	1293 bp downstream